altitude: 0
anonymized_name: P6_MARSH1-F
assigned_from_geo: False
barcode: CACGTTTATTCC
body_habitat: not applicable
body_product: not applicable
body_site: not applicable
center_name:
University of California San Diego Microbiome Init (show full text...)(hide...)University of California San Diego Microbiome Initiative
center_project_name: Whitehead fish
collection_timestamp: 1/1/14 0:00
common_name: seawater metagenome
country: USA
depth: 0
description: Site P6 MARSH1 filtered water
dna_extracted: True
elevation: 0
emp_status: EMP
env_biome: estuarine biome
env_feature: marsh
env_material: brackish water
env_matter: brackish water
env_package: water
experiment_center: UC Davis
experiment_title: Whitehead salinity series
extraction_robot: HOWE
extractionkit_lot: PS15F22
has_physical_specimen: True
host_common_name: seawater metagenome
host_subject_id: P6_MARSH1-F
host_taxid: 1561972
lane: lane 1
latitude: 36.99
linker: GT
longitude: -75.96
mastermix_lot: 151028862
orig_name: P6_MARSH1-F
pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
physical_specimen_location: UC Davis
physical_specimen_remaining: False
plating: LG
primer: GTGTGCCAGCMGCCGCGGTAA
primer_date: 73015
primer_plate: 1
processing_robot: ROBE
project_name: Whitehead_Fish
public: True
required_sample_info_status: completed
run_center: UCSDMI
run_date: 2/7/17
run_prefix: lane1_Undetermined_L001
samp_size: .1,g
sample_plate: WH_Fish_Plate1
sample_type: brackish water
scientific_name: seawater metagenome
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
taxon_id: 1561972
title:
Patterns of microbiome transition along salinity g (show full text...)(hide...)Patterns of microbiome transition along salinity gradients, and importance for fish host adaptive divergence across osmotic boundaries.
tm1000_8_tool: 108379Z
tm300_8_tool: 311313B
tm50_8_tool: 111075B
water_lot: RNBD2494
well_description: WH_Fish_Plate1_P6_MARSH1-F_B11
well_id: B11